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A distal single nucleotide polymorphism alters long-range regulation of the PU.1 gene in acute myeloid leukemia

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Item Type:Article
Title:A distal single nucleotide polymorphism alters long-range regulation of the PU.1 gene in acute myeloid leukemia
Creators Name:Steidl, U., Steidl, C., Ebralidze, A., Chapuy, B., Han, H.J., Will, B., Rosenbauer, F., Becker, A., Wagner, K., Koschmieder, S., Kobayashi, S., Costa, D.B., Schulz, T., OBrien, K.B., Verhaak, R.G.W., Delwel, R., Haase, D., Truemper, L., Krauter, J., Kohwi-Shigematsu, T., Griesinger, F. and Tenen, D.G.
Abstract:Targeted disruption of a highly conserved distal enhancer reduces expression of the PU.1 transcription factor by 80% and leads to acute myeloid leukemia (AML) with frequent cytogenetic aberrations in mice. Here we identify a SNP within this element in humans that is more frequent in AML with a complex karyotype, leads to decreased enhancer activity, and reduces PU.1 expression in myeloid progenitors in a development-dependent manner. This SNP inhibits binding of the chromatin-remodeling transcriptional regulator special AT-rich sequence binding protein 1 (SATB1). Overexpression of SATB1 increased PU.1 expression, and siRNA inhibition of SATB1 downregulated PU.1 expression. Targeted disruption of the distal enhancer led to a loss of regulation of PU.1 by SATB1. Interestingly, disruption of SATB1 in mice led to a selective decrease of PU.1 RNA in specific progenitor types (granulocyte-macrophage and megakaryocyte-erythrocyte progenitors) and a similar effect was observed in AML samples harboring this SNP. Thus we have identified a SNP within a distal enhancer that is associated with a subtype of leukemia and exerts a deleterious effect through remote transcriptional dysregulation in specific progenitor subtypes.
Keywords:Acute Myeloid Leukemia, Base Sequence, Down-Regulation, Human Genome, Lymphocyte Homing Receptors, Molecular Sequence Data, Neoplastic Gene Expression Regulation, Neuronal Cell Adhesion Molecules, Proto-Oncogene Proteins, Single Nucleotide Polymorphism, Stem Cells, Trans-Activators, Tumor Cell Line, Animals, Mice
Source:Journal of Clinical Investigation
ISSN:0021-9738
Publisher:American Society for Clinical Investigation
Volume:117
Number:9
Page Range:2611-2620
Date:4 September 2007
Official Publication:https://doi.org/10.1172/JCI30525
PubMed:View item in PubMed

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