Browse by Journal Title

2023

An integrate-and-fire approach to Ca(2+) signaling. Part II: Cumulative refractoriness.
Ramlow, L., Falcke, M. and Lindner, B.
Biophysical Journal 122 (24): 4710-4729. 19 December 2023

Modeling IP(3)-induced Ca(2+) signaling based on its interspike interval statistics.
Friedhoff, V.N., Lindner, B. and Falcke, M.
Biophysical Journal 122 (13): 2818-2831. 11 July 2023

On multistability and constitutive relations of cell motion on Fibronectin lanes.
Amiri, B., Heyn, J.C.J., Schreiber, C., Rädler, J.O. and Falcke, M.
Biophysical Journal 122 (5): 753-766. 7 March 2023

An integrate-and-fire approach to Ca(2+) signaling. Part I: Renewal model.
Ramlow, L., Falcke, M. and Lindner, B.
Biophysical Journal 122 (4): 713-736. 21 February 2023

2021

Stochastic reaction-diffusion modeling of calcium dynamics in 3D-dendritic spines of purkinje cells.
Friedhoff, V.N., Antunes, G., Falcke, M. and Simões de Souza, F.M.
Biophysical Journal 120 (11): 2112-2123. 1 June 2021

2020

Chromosomes phase transition to function.
Nicodemi, M. and Bianco, S.
Biophysical Journal 119 (4): 724-725. 18 August 2020

2019

Multiscale modeling of dyadic structure-function relation in ventricular cardiac myocytes.
Cosi, F.G., Giese, W., Neubert, W., Luther, S., Chamakuri, N., Parlitz, U. and Falcke, M.
Biophysical Journal 117 (12): 2409-2419. 17 December 2019

Polymer-like model to study the dynamics of dynamin filaments on deformable membrane tubes.
Noel, J.K., Noé, F., Daumke, O. and Mikhailov, A.S.
Biophysical Journal 117 (10): 1870-1891. 19 November 2019

2018

PolNet: a tool to quantify network-level cell polarity and blood flow in vascular remodeling.
Bernabeu, M.O., Jones, M.L., Nash, R.W., Pezzarossa, A., Coveney, P.V., Gerhardt, H. and Franco, C.A.
Biophysical Journal 114 (9): 2052-2058. 8 May 2018

2017

Molecular simulations suggest a force-dependent mechanism of vinculin activation.
Sun, L., Noel, J.K., Levine, H. and Onuchic, J.N.
Biophysical Journal 113 (8): 1697-1710. 17 October 2017

Mapping interpuff interval distribution to the properties of inositol trisphosphate receptors.
Cao, P., Falcke, M. and Sneyd, J.
Biophysical Journal 112 (10): 2138-2146. 23 May 2017

2016

Dynamics of the ligand binding domain layer during AMPA receptor activation.
Baranovic, J., Chebli, M., Salazar, H., Carbone, A.L., Faelber, K., Lau, A.Y., Daumke, O. and Plested, A.J.R.
Biophysical Journal 110 (4): 896-911. 23 February 2016

2015

Mitochondrial networks in cardiac myocytes reveal dynamic coupling behavior.
Kurz, F.T., Derungs, T., Aon, M.A., O'Rourke, B. and Armoundas, A.A.
Biophysical Journal 108 (8): 1922-1933. 21 April 2015

2014

Simultaneous Raman microspectroscopy and fluorescence imaging of bone mineralization in living zebrafish larvae.
Bennet, M., Akiva, A., Faivre, D., Malkinson, G., Yaniv, K., Abdelilah-Seyfried, S., Fratzl, P. and Masic, A.
Biophysical Journal 106 (4): L17-L19. 18 February 2014

2013

A stochastic model of calcium puffs based on single-channel data.
Cao, P., Donovan, G., Falcke, M. and Sneyd, J.
Biophysical Journal 105 (5): 1133-1142. 3 September 2013

2012

Quantitative intensity-based FRET approaches - a comparative snapshot.
Zeug, A., Woehler, A., Neher, E. and Ponimaskin, E.
Biophysical Journal 103 (9): 1821-1827. 7 November 2012

Actin filament elasticity and retrograde flow shape the force-velocity relation of motile cells.
Zimmermann, J., Brunner, C., Enculescu, M., Goegler, M., Ehrlicher, A., Kaes, J. and Falcke, M.
Biophysical Journal 102 (2): 287-295. 18 January 2012

2011

Timescales of IP(3)-evoked Ca(2+) spikes emerge from Ca(2+) puffs only at the cellular level.
Thurley, K., Smith, I.F., Tovey, S.C., Taylor, C.W., Parker, I. and Falcke, M.
Biophysical Journal 101 (11): 2638-2644. 7 December 2011

Mechanics on myocardium deficient in the N2B region of titin: the cardiac-unique spring element improves efficiency of the cardiac cycle.
Nedrud, J., Labeit, S., Gotthardt, M. and Granzier, H.
Biophysical Journal 101 (6): 1385-1392. 21 September 2011

Fluorescence cross-correlation spectroscopy reveals mechanistic insights into the effect of 2'-O-methyl modified siRNAs in living cells.
Ohrt, T., Staroske, W., Muetze, J., Crell, K., Landthaler, M. and Schwille, P.
Biophysical Journal 100 (12): 2981-2990. 22 June 2011

Metabolic synchronization by traveling waves in yeast cell layers.
Schuetze, J., Mair, T., Hauser, M.J., Falcke, M. and Wolf, J.
Biophysical Journal 100 (4): 809-813. 16 February 2011

2010

Routes of epithelial water flow: aquaporins versus cotransporters.
Mollajew, R., Zocher, F., Horner, A., Wiesner, B., Klussmann, E. and Pohl, P.
Biophysical Journal 99 (11): 3647-3656. 1 December 2010

Signal/noise analysis of FRET-based sensors.
Woehler, A., Wlodarczyk, J. and Neher, E.
Biophysical Journal 99 (7): 2344-2354. 6 October 2010

Modeling of protrusion phenotypes driven by the actin-membrane interaction.
Enculescu, M., Sabouri-Ghomi, M., Danuser, G. and Falcke, M.
Biophysical Journal 98 (8): 1571-1581. 21 April 2010

Expanding two-photon intravital microscopy to the infrared by means of optical parametric oscillator.
Herz, J., Siffrin, V., Hauser, A.E., Brandt, A.U., Leuenberger, T., Radbruch, H., Zipp, F. and Niesner, R.A.
Biophysical Journal 98 (4): 715-723. 17 February 2010

2009

Modeling of the modulation by buffers of Ca2+ release through clusters of IP3 receptors.
Zeller, S., Ruediger, S., Engel, H., Sneyd, J., Warnecke, G., Parker, I. and Falcke, M.
Biophysical Journal 97 (4): 992-1002. 19 August 2009

Cardiomyopathy mutations reveal variable region of myosin converter as major element of cross-bridge compliance.
Seebohm, B., Matinmehr, F., Koehler, J., Francino, A., Navarro-Lopez, F., Perrot, A., Oezcelik, C., McKenna, W.J., Brenner, B. and Kraft, T.
Biophysical Journal 97 (3): 806-824. 5 August 2009

A kinetic model of the inositol trisphosphate receptor based on single-channel data.
Gin, E., Falcke, M., Wagner, L.E., Yule, D.I. and Sneyd, J.
Biophysical Journal 96 (10): 4053-4062. 20 May 2009

2008

Probing intranuclear environments at the single molecule level.
Gruenwald, D., Martin, R.M., Buschmann, V., Bazett-Jones, D.P., Leonhardt, H., Kubitscheck, U. and Cardoso, M.C.
Biophysical Journal 94 (7): 2847-2858. 1 April 2008

How does intracellular Ca2+ oscillate: by chance or by the clock?
Skupin, A., Kettenmann, H., Winkler, U., Wartenberg, M., Sauer, H., Tovey, S.C., Taylor, C.W. and Falcke, M.
Biophysical Journal 94 (6): 2404-2411. 15 March 2008

Analysis of FRET signals in the presence of free donors and acceptors.
Wlodarczyk, J., Woehler, A., Kobe, F., Ponimaskin, E., Zeug, A. and Neher, E.
Biophysical Journal 94 (3): 986-1000. 1 February 2008

2007

Quasi-steady approximation for ion channel currents.
Bentele, K. and Falcke, M.
Biophysical Journal 93 (8): 2597-2608. 15 October 2007

Hybrid stochastic and deterministic simulations of calcium blips.
Ruediger, S., Shuai, J.W., Huisinga, W., Nagaiah, C., Warnecke, G., Parker, I. and Falcke, M.
Biophysical Journal 93 (6): 1847-1857. 15 September 2007

2006

Endogenous KCNE subunits govern Kv2.1 K+ channel activation kinetics in Xenopus oocyte studies.
Gordon, E., Roepke, T.K. and Abbott, G.W.
Biophysical Journal 90 (4): 1223-1231. 15 February 2006

2005

Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II. Sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.
Dixit, S.B., Beveridge, D.L., Case, D.A., Cheatham, T.E., Guidice, E., Lankas, F., Lavery, R., Maddocks, J.H., Osman, R., Sklenar, H., Thayer, K. and Varnai, P.
Biophysical Journal 89 (6): 3721-3740. December 2005

Influence of substrate binding on the mechanical stability of mouse dihydrofolate reductase.
Junker, J.P., Hell, K., Schlierf, M., Neupert, W. and Rief, M.
Biophysical Journal 89 (5): L46-L48. November 2005

Specific and nonspecific hybridization of oligonucleotide probes on microarrays.
Binder, H. and Preibisch, S.
Biophysical Journal 89 (1): 337-352. July 2005

2004

Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides.
Beveridge, D.L., Barreiro, G., Byun, S.K., Case, D.A., Cheatham, T.E., Dixit, S.B., Giudice, E., Lankas, F., Lavery, R., Maddocks, J.H., Osman, R., Seibert, E., Sklenar, H., Stoll, G., Thayer, K.M., Varnai, P. and Young, M.A.
Biophysical Journal 87 (6): 3799-3813. December 2004

Modeling feedback loops of the Mammalian circadian oscillator.
Becker-Weimann, S., Wolf, J., Herzel, H. and Kramer, A.
Biophysical Journal 87 (5): 3023-3034. November 2004

Release currents of IP(3) receptor channel clusters and concentration profiles.
Thul, R. and Falcke, M.
Biophysical Journal 86 (5): 2660-2673. May 2004

2003

Modeling the dependence of the period of intracellular Ca2+ waves on SERCA expression.
Falcke, M., Li, Y., Lechleiter, J.D. and Camacho, P.
Biophysical Journal 85 (3): 1474-1481. September 2003

Buffers and oscillations in intracellular Ca2+ dynamics.
Falcke, M.
Biophysical Journal 84 (1): 28-41. January 2003

On the role of stochastic channel behavior in intracellular Ca2+ dynamics.
Falcke, M.
Biophysical Journal 84 (1): 42-56. January 2003

2001

Cell volume kinetics of adherent epithelial cells measured by laser scanning reflection microscopy: determination of water permeability changes of renal principal cells.
Maric, K., Wiesner, B., Lorenz, D., Klussmann, E., Betz, T. and Rosenthal, W.
Biophysical Journal 80 (4): 1783-1790. April 2001

2000

Conformational deformability of RNA: A harmonic mode analysis.
Zacharias, M. and Sklenar, H.
Biophysical Journal 78 (5): 2528-2542. May 2000

Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations.
Wolf, J., Passarge, J., Somsen, O.J., Snoep, J.L., Heinrich, R. and Westerhoff, H.V.
Biophysical Journal 78 (3): 1145-1153. March 2000

1999

Impact of mitochondrial Ca2+ cycling on pattern formation and stability.
Falcke, M., Hudson, J.L., Camacho, P. and Lechleiter, J.D.
Biophysical Journal 77 (1): 37-44. July 1999

Unraveling proteins: A molecular mechanics study.
Rohs, R., Etchebest, C. and Lavery, R.
Biophysical Journal 76 (5): 2760-2768. May 1999

1998

Interaction of Tet repressor with operator DNA and with tetracycline studied by infrared and Raman spectroscopy.
Krafft, C., Hinrichs, W., Orth, P., Saenger, W. and Welfle, H.
Biophysical Journal 74 (1): 63-71. January 1998

1997

Analysis of the stability of looped-out and stacked-in conformations of an adenine bulge in DNA using a continuum model for solvent and ions.
Zacharias, M. and Sklenar, H.
Biophysical Journal 73 (6): 2990-3003. December 1997

Independent gating of single pores in CLC-0 chloride channels.
Ludewig, U., Pusch, M. and Jentsch, T.J.
Biophysical Journal 73 (2): 789-797. August 1997

Influence of static and dynamic bends on the birefringence decay profile of RNA helices: Brownian dynamics simulations.
Zacharias, M. and Hagerman, P.J.
Biophysical Journal 73 (1): 318-332. July 1997

Effect of hydrostatic pressure on water penetration and rotational dynamics in phospholipid cholesterol bilayers.
Bernsdorff, C., Wolf, A., Winter, R. and Gratton, E.
Biophysical Journal 72 (3): 1264-1277. March 1997

Molecular mass determination by sedimentation velocity experiments and direct fitting of the concentration profiles.
Behlke, J. and Ristau, O.
Biophysical Journal 72 (1): 428-434. January 1997

1994

Low single channel conductance of the major skeletal muscle chloride channel, ClC-1.
Pusch, M., Steinmeyer, K. and Jentsch, T.J.
Biophysical Journal 66 (1): 149-152. January 1994