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| Item Type: | Article |
|---|---|
| Title: | MOCAT2: a metagenomic assembly, annotation and profiling framework |
| Creators Name: | Kultima, J.R., Coelho, L.P., Forslund, K., Huerta-Cepas, J., Li, S.S., Driessen, M., Voigt, A.Y., Zeller, G., Sunagawa, S. and Bork, P. |
| Abstract: | MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes. Availability and Implementation: MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de. Contact: bork@embl.de |
| Keywords: | Factual Databases, Metagenome, Metagenomics, Software |
| Source: | Bioinformatics |
| ISSN: | 1367-4803 |
| Publisher: | Oxford University Press |
| Volume: | 32 |
| Number: | 16 |
| Page Range: | 2520-2523 |
| Date: | 15 August 2016 |
| Official Publication: | https://doi.org/10.1093/bioinformatics/btw183 |
| PubMed: | View item in PubMed |
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